.. Segway documentation master file, created by sphinx-quickstart on Thu Apr 16 15:13:23 2009. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. Segway |version| Documentation ============================== :Homepage: http://pmgenomics.ca/hoffmanlab/proj/segway :Author: Michael M. Hoffman :Organization: Princess Margaret Cancer Centre :Address: Toronto Medical Discovery Tower 11-311, 101 College St, M5G 1L7, Toronto, Ontario, Canada :Copyright: 2009-2015 Michael M. Hoffman :Last updated: |today| .. currentmodule:: segway .. include:: For a conceptual overview see the paper: Michael M. Hoffman, Orion J. Buske, Zhiping Weng, Jeff A. Bilmes, William Stafford Noble. 2012. `Unsupervised pattern discovery in human chromatin structure through genomic segmentation `_. *Nat Methods* 9:473-476. `doi:10.1038/nmeth.1937 `_. `Manuscript version `_ available at PubMed Central requires no subscription. For a preprint of a protocol on using Segway see: Roberts EG, Mendez M, Viner C, Karimzadeh M, Chan RCW, Ancar R, Chicco D, Hesselberth JR, Kundaje A, Hoffman MM. 2016. `Semi-automated genome annotation using epigenomic data and Segway `_. Preprint: ``_ .. toctree:: :maxdepth: 2 quick segway technical faq troubleshooting support .. Currently all empty .. Indices and tables .. ================== .. * :ref:`genindex` .. * :ref:`modindex` .. * :ref:`search` ..